Selected Pulications

Selected Pulications

Huttenhower C*, Haley EM*, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG. Exploring the human genome with functional maps. Genome Res. 2009, 19(6):1093-106

Airoldi EM*, Huttenhower C*, Gresham D, Broach JR, Botstein D, Troyanskaya OG. Predicting the rate of cellular growth from gene expression states. PLoS Comp. Bio. 2009, 5(1)

Hess DC, Myers CL*, Huttenhower C*, Hibbs MA*, Hayes AP, Paw J, Clore JJ, Mendoza RM, San Luis B, Nislow C, Giaever G, Costanzo M, Troyanskaya OG†, Caudy AA†. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genetics 2009, 5(3)

Huttenhower C, Troyanskaya OG. Assessing the functional structure of genomic data. Bioinformatics 2008, 24(13):i330-8

Brauer MJ, Huttenhower C*, Airoldi EM*, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D. Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol. Bio. Cell 2008, 19(1):352-67

Huttenhower C, Schroeder M, Chikina MD, Troyanskaya OG. The Sleipnir library for computational functional genomics. Bioinformatics 2008, 24(13):1559-61

Chi A*, Huttenhower C*, Geer LY, Coon JJ, Syka JE, Bai DL, Shabinowitz J, Burke DJ, Troyanskaya OG, Hunt D. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. PNAS 2007, 104(7):2193-8

Huttenhower C, Hibbs MA, Myers CL, Troyanskaya OG. A scalable method for integration and functional analysis of multiple microarray datasets. Bioinformatics 2006, 22(23):2890-7