Publications

Yuan GC. Linking genome to epigenome. Wiley Interdiscip Rev Syst Biol Med. 2012 Feb 17. doi: 10.1002/wsbm.1165. [Epub ahead of print]

Larson JL, Yuan GC. Chromatin states accurately classify cell differentiation stages. PLoS One. 2012;7(2):e31414. Epub 2012 Feb 20..

Pinello L, Lo Bosco G, Hanlon B, Yuan GC. A model-free method for estimating sequence specificity. BMC Bioinformatics. 2011 Oct 21:12(1):408.

Larson JL, Yuan GC. Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. BMC Bioinformatics. 2010 Nov 12;11(1):557.

Liu Y, Shao Z, Yuan GC. Prediction of Polycomb target genes in mouse embryonic stem cells. Genomics. 2010 Jul;96(1):17-26. Epub 2010 Mar 29

Lantermann AB, Straub T, Strålfors A, Yuan GC, Eckwall K, Korber P. Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from Saccharomyces cerevisiae. Nature Structural and Molecular Biology 2010 Feb;17(2):251-7.

Shen X, Kim W, Fujiwara Y, Liu Y, Mysliwiec MR, Yuan GC, Lee Y, Orkin SH. Jumonji modulates Polycomb activity and self-renewal versus differentiation of stem cells. Cell 2009 Dec 24;139(7):1303-14.

Shen X, Liu Y, Hsu YJ, Fujiwara Y, Kim J, Mao X, Yuan GC, Orkin SH, EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency. Molecular Cell 2008. Nov 21;32(4):491-502.

Yuan, G.C. and J.S. Liu, Genomic sequence is highly predictive of local nucleosome depletion. PLoS Computational Biology 2008 Jan;4(1):e13.

Yuan, G.C., Y.-J. Liu, M.F. Dion, M.D. Slack, L.F. Wu, S.J. Altschuler, and O.J. Rando, Genome-scale Identification of Nucleosome Positions in S. Cerevisiae, Science, 2005, 309(5734), p.626