Recent Publications
Google Scholar profile for Levi Waldron.
2012
Waldron, L., Simpson, P.T., Parmigiani, G., Huttenhower, C. Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues. BMC Cancer 12(1):124 (2012).
Waldron, L., Coller, H. & Huttenhower, C. Integrative Approaches for Microarray Data Analysis. In Methods in Molecular Biology 802:157-182 (2012).
Yamauchi, M.*, Morikawa, T.*, Kuchiba, A.*, Imamura, Y., Qian, Z.R., Nishihara, R., Liao, X., Waldron, L., Hoshida, Y., Huttenhower, C., Chan, A.T., Giovannucci, E., Fuchs, C.S., Ogino, S.. Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal vs. distal colorectum. Gut (Online First, 2012). *equal contribution
2011
Waldron, L., Pintilie, M., Tsao, M-S., Shepherd, F.A., Huttenhower, C.*, Jurisica, I.* Optimized Application of penalized regression to diverse genomic data. Bioinformatics 27(24): 3399-3406 (2011). *equal contribution
Eppert, K., Takenaka, K.*, Lechman, E.*, Waldron, L.*, Nilsson, B.*, van Galen, P., Poeppl, A., Ling, V., Beyene, J., Canty, A., Danska, J., Bohlander, S., Buske, C., Minden, M., Golub, T., Jurisica, I., Ebert, B., Dick, J. Stem Cell Gene Expression Programs Influence Clinical Outcome in Human Leukemia. Nature Medicine 17, 1086-1093 (2011). Press releases in Cell Stem Cell and Nature Medicine. *equal contribution
Reis, P.*, Waldron, L.*, Perez-Ordonez, B., Pintilie, M., Galloni, N., Xuan, Y., Cervigne, N., Warner, G., Makitie, A., Simpson, C., Goldstein, D., Brown, D., Gilbert, R., Gullane, P., Irish, J., Jurisica, I. & Kamel-Reid, S. Surgical resection margins as a prognostic indicator of recurrence of tongue cancer. BMC Cancer 11:437 (2011). Press release. *equal contribution
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W.S., Huttenhower, C.: Metagenomic biomarker discovery and explanation. Genome Biology 12:R60 (2011).
Reis, P., Waldron, L., Goswami, R., Xu, W., Xuan, Y., Perez-Ordonez, B., Gullane, P., Irish, J., Jurisica, I. & Kamel-Reid, S. mRNA transcript quantification in clinical archival samples using multiplexed, color-coded probe pairs. BMC Biotechnology 11:46 (2011).
Shi, W, Gerster, K, Alajez, NM, Tsang, J, Waldron, L, Pintilie, M, Hui, AB, Sykes, J, P’ng, C, Miller, N, McCready, D, Fyles, A, Liu, FF. MicroRNA-301 mediates proliferation and invasion in human breast cancer. Cancer Research 71(8), 2926-37 (2011).
2010
Goswami, R.*, Waldron, L.*, Machado, J., Cervigne, N., Xu, W., Reis, P., Bailey, D., Jurisica, I., Crump, M., & Kamel-Reid, S. Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples. BMC Biotechnology 10:47 (2010). *equal contribution
Hui, A., Lenarduzzi, M., Krushel, T., Waldron, L., Pintilie, M., Shi, W., Perez-Ordonez, B., Jurisica, I., O’Sullivan, B., Waldron, J., Gullane, P., Cummings, B. & Liu, F-F. Comprehensive microRNA profiling for head & neck squamous cell carcinomas. Clinical Cancer Research 16:4 (2010).
Hui, A.B.Y., Shi, W., Boutros, P.C., Miller, N., Pintilie, M., Fyles, T., Mccready, D., Wong, D., Gerster, K., Waldron, L., Jurisica, I., Penn, L.Z. & Liu, F-F. Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues. Laboratory Investigation 89, 597-606 (2009).