Papers

LD Score Regression Distinguishes Confounding from Polygenicity in Genome-Wide Association Studies

Bulik-Sullivan B, Loh P-R, Finucane H, Ripke S, Yang J, Schizophrenia Working Group PGC, Patterson N, Daly M, Price A, and Neale B.
bioRxiv, 2014

Ancient west Eurasian ancestry in southern and eastern Africa

Joseph K. Pickrell, Nick Patterson, Po-Ru Loh, Mark Lipson, Bonnie Berger, Mark Stoneking, Brigitte Pakendorf, and David Reich
PNAS, 2014

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach

Meyer P, Cokelaer T, Chandran D, Kim K, Loh P-R, et al.
BMC Systems Biology, 2014

A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis

Tucker G, Loh P-R, and Berger B
BMC Bioinformatics, 2013

Genetic Evidence for Recent Population Mixture in India

Priya Moorjani, Kumarasamy Thangaraj, Nick Patterson, Mark Lipson, Po-Ru Loh, Periyasamy Govindaraj, Bonnie Berger, David Reich, and Lalji Singh
American Journal of Human Genetics, 2013

Efficient moment-based inference of admixture parameters and sources of gene flow

Mark Lipson, Po-Ru Loh, Alex Levin, David Reich, Nick Patterson, and Bonnie Berger
Molecular Biology and Evolution, 2013; see also the MixMapper software page

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

Po-Ru Loh, Mark Lipson, Nick Patterson, Priya Moorjani, Joseph K Pickrell, David Reich, and Bonnie Berger
Genetics, 2013; see also the ALDER software page
Featured as the cover article of the April 2013 issue of Genetics

Reconstructing Roma history from genome-wide data

Priya Moorjani, Nick Patterson, Po-Ru Loh, Mark Lipson, Péter Kisfali, Bela I Melegh, Michael Bonin, Ľudevít Kádaši, Olaf Rieß, Bonnie Berger, David Reich, and Béla Melegh
PLoS ONE, 2013

Prize-based contests can provide solutions to computational biology problems

Karim R Lakhani, Kevin J Boudreau, Po-Ru Loh, Lars Backstrom, Carliss Baldwin, Eric Lonstein, Mike Lydon, Alan MacCormack, Ramy A Arnaout, and Eva C Guinan
Nature Biotechnology, 2013
Featured in Harvard Medical School News 2/7/13, Boston Globe 2/11/13

The genetic prehistory of southern Africa

Pickrell JK, Patterson N, Barbieri C, Berthold F, Gerlach L, Guldemann T, Kure B, Mpoloka SW, Nakagawa H, Naumann C, Lipson M, Loh PR, Lachance J, Mountain J, Bustamante C, Berger B, Tishkoff S, Henn B, Stoneking M, Reich D, and Pakendorf B
Nature Communications, 2012

Compressive Genomics

Po-Ru Loh, Michael Baym, and Bonnie Berger
Nature Biotechnology, 2012
Featured in the MIT Spotlight (home page) 7/12/12

Assessing Statistical Significance in Causal Graphs

Leonid Chindelevitch, Po-Ru Loh, Ahmed Enayetallah, Bonnie Berger, and Daniel Ziemek
BMC Bioinformatics, 2012

Phenotype prediction using regularized regression on genetic data in the DREAM5 Systems Genetics B Challenge

Po-Ru Loh, George Tucker, and Bonnie Berger
PLoS ONE, 2011

Building quantitative prediction models for tissue residue of two explosives compounds in earthworms from microarray gene expression data

Ping Gong, Po-Ru Loh, Natalie D. Barker, George Tucker, Nan Wang, Chenhua Zhang, B. Lynn Escalon, Bonnie Berger, and Edward J. Perkins
Environmental Science & Technology, 2011

Assessment of chemical mixtures and ground water effects on Daphnia magna transcriptomics

Natalia Garcia-Reyero, B. Lynn Escalon, Po-Ru Loh, Jennifer G. Laird, Alan J. Kennedy, Bonnie Berger, and Edward J. Perkins
Environmental Science & Technology, 2011

Making Polygons by Simple Folds and One Straight Cut

Erik Demaine, Martin Demaine, Andrea Hawksley, Hiro Ito, Po-Ru Loh, Shelly Manber, and Omari Stephens
Proceedings of the 2010 China-Japan Joint Conference on Computational Geometry, Graphs, and Applications (CGGA 2010), 2010

Fundamental relation between phase and group velocity, and application to the failure of perfectly matched layers in backward-wave structures

Po-Ru Loh, Ardavan F. Oskooi, Mihai Ibanescu, Maksim Skorobogatiy, and Steven G. Johnson
Physical Review E, 2009

Stepping to Infinity Along Gaussian Primes

Po-Ru Loh
American Mathematical Monthly, 2007

p-adic and Combinatorial Properties of Modular Form Coefficients

Po-Ru Loh and Robert Rhoades
International Journal of Number Theory, 2006