Publications

• Schmidt, M.S., Houseman, E.A., Ivanov, A.R., Wolf, D.A. (2007) Comprehensive comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe. Molecular Systems Biology 3:79. [pdf]
   
• Heilig, E.A., Thompson, K.J., Molina, R.M., Ivanov, A.R., Brain, J.D., Wessling-Resnick, M. (2006) Manganese and Iron Transport across Pulmonary Epithelium. AJP: Lung, Cell and Molecular Physiology, Jun;290(6):L1247-59. . [pdf]
   
• Zhou, C., Arslan, F., Wee, S., Krishnan, S., Oliva, A., Leatherwood, J.,  Wolf, D.A. (2005) PCI proteins eIF3e and eIF3m define distinct translation initiation factor 3 complexes. BMC Biology,  3:14 [pdf]
   
• Doud, M.K., Schmidt, M.W., Hines, D., Naumann, C., Kocourek, A., Kashani-Poor, N., Zeidler, R., Wolf, D.A. (2004) Rapid prefractionation of complex protein lysates with centrifugal membrane adsorber units improves the resolving power of 2D-PAGE-based proteome analysis. BMC Genomics 5:25 [pdf]
   
• Schmidt, M., Jain, A., Wolf. D.A. (2003) Multidimensional proteomic analysis of proteolytic pathways involved in cell cycle control.  In: Cell Cycle Checkpoint Control Protocols.  Lieberman H. B. ed.  New York: Humana Press Vol. 241: 235-245 

Oral Presentations and Invited Talks

• 3rd International Symposium on Separations in BioSciences (SBS ’03), Moscow, Russia, 5/11/2003 Polymeric monolithic capillary columns in proteomics

• ·         Science and Technology Lecture Series, Pfizer, Groton, CT 9/25/2004 Monolithic Capillary Columns in High Sensitivity Proteomic Analysis of Complex Samples

• ·         The Annual Barnett Institute Retreat, Boston, MA, 3/28/2005 Monoliths in High Sensitivity Proteomics Analysis

• ·         CNECC Meeting, Boston, MA, 3/22/2005 Prefractionation and Separation Strategies in Proteomic Studies

• ·         53^th American Society for Mass Spectrometry Conference, ASMS’2005, San Antonio, TX, 6/9/2005 Prefractionation and Separation Strategies in Studies of Complex Proteomes

• ·         Biotechnology Summer School in Gdansk, Poland BSS’2005, 7/18/05 Separation Approaches in Mass Spectrometry-Based Studies of Complex Proteomes

• ·         Annual Retreat of the Division of Biological Sciences and Biological Sciences in Public Health at HSPH (DBS-BPH Retreat), Chatham, MA, 10/14/2005 Promises and Challenges of Plasma Proteomics

• ·         55^th American Society for Mass Spectrometry Conference, ASMS’2007, Indianapolis, IN, 6/5/2007 Comprehensive Comparative Proteomic and Transcriptomic Profiling of the Fission Yeast Schizosaccharomyces pombe

• ·         Annual Retreat of the Division of Biological Sciences and Biological Sciences in Public Health at HSPH (DBS-BPH Retreat), Chatham, MA, Challenges of Fat Adipose Tissue Analysis, 10/26/2007

• ·         Bioinformatics Core Forum at HSPH, Advances and Challenges in Mass Spectrometry-Based Proteomics: Making Sense of Proteomics in the Context of Systems Biology, 12/04/07

• ·         ABRF’2008, Association of Biomolecular Resource Facilities Annual Conference, Salt Lake City, UT, 02/11/2008 Inferring Protein Quantities from Peptides: Considerations in Selecting Peptide Sequences for Synthesis as Stable Isotope Labeled Standards

• ·         USHUPO’2008, US Human Proteome Organization Annual Conference, North Bethesda, MD, March 16-19, 2008 Comprehensive Analysis of White Adipose Tissue using Detergent-Free Protein Extraction by Pressure Cycling and High Resolution Tandem Mass Spectrometry

• ·         GeneGO International Seminar on Pathway Analysis’ 2008, Boston, MA, 05/01/2008  Comprehensive Analysis of Murine Fat Adipose Tissue: from Sample Preparation to Systems Biology.

• ·          GOT Summit Getting Optimized Tools for Diagnostics, Genomic Sample Preparation/ Proteomic Tools for Diagnostics, Eighth Annual Conference, Boston, MA, May 19-21, 2008 Comprehensive Analysis of Fat Adipose Tissue using Detergent-Free Protein Extraction by Pressure Cycling and High Resolution Tandem Mass Spectrometry

• ·         56^th American Society for Mass Spectrometry Conference, ASMS’2008, SageN Users Workshop, Denver, CO, 6/1/2008 Linking proteomics to systems biology.

• ·         Molecular and Integrative Physiological Sciences Seminar Series, HSPH, 6/17/2008. Proteomics. Next Stop is Systems Biology: Exploring and Expanding the Proteomics Tool-Box.

• ·         OPTM’2008 Annual Meeting on Oxidative Post-Translational Modifications in the Cardiovascular System, Boston, MA 10/02/08  Towards Efficient Characterization of Dynamic Proteomic Changes Induced by Oxidative Stress  

• ·         ABRF’2009, Association of Biomolecular Resource Facilities Annual Conference, Memphis, TN. 2/7/2009. Proteomics Standards Research Group (sPRG). sPRG2009 Prototype Sample at HSPH.

• Schmidt, M.S., Houseman, E.A., Doud, M.K., Wolf, D.A.,Ivanov, A.R. (2007) Comprehensive comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe. 55th ASMS Conference on Mass Spectrometry, Indianapolis.

• Doud, M.K., Schmidt, M.S., Wolf, D.A.,Ivanov, A.R. (2005) Prefractionation and Separation Strategies in Studies of Complex Proteomes. 53rd ASMS Conference on Mass Spectrometry, San Antonio. [pdf]

• Ivanov, A.R. (2004) Monolithic Capillary Columns in On-Line 2D-LC ESI-MS in Proteomic Analysis. 52nd ASMS Conference on Mass Spectrometry, Nashville. [pdf]

• Lazarev, A., Smejkal, G., Romanovsky, I., Kwan, A., Cao, H., Hotamisligil, G.S., Ivanov, A.R. (2007) Proteomic Analysis of Murine Adipose Tissue Using Pressure Cycling Technology and High Resolution Tandem Mass Spectrometry. US HUPO 2007, Seattle, WA.  
   

Posters 

• USHUPO’2007, US Human Proteome Organization Annual Conference, Seattle, WA, 2007, March 5-8, 2007, Differential Proteomic Analysis of Murine Adipose Tissue Using Pressure Cycling Technology and High Resolution Tandem Mass Spectrometry. Alexander Lazarev; Gary Smejkal; Ilyana Romanovsky; Ada Kwan; Haiming Cao; Gökhan S. Hotamisligil, Alexander R. Ivanov
• 55^th American Society for Mass Spectrometry Conference, ASMS’2007, Indianapolis, IN, 6/5-10/2007 Proteomic Analysis of Adipose Tissue Using Detergent-Free Protein Extraction by Pressure Cycling and High Resolution Tandem Mass Spectrometry. Alexander Lazarev; Gary Smejkal; Ilyana Romanovsky; Haiming Cao; Gökhan S. Hotamisligil, Alexander R. Ivanov

• 55^th American Society for Mass Spectrometry Conference, ASMS’2007, Indianapolis, IN, 6/5-10/2007 MS peak picking and quality assessment tools for proteomics. Thomas Patterson, Hanno Steen, Alexander R. Ivanov

• ABRF’2008, Association of Biomolecular Resource Facilities Annual Conference, Salt Lake City, UT, February 9-12, 2008 Tissue Fractionation by Hydrostatic Pressure Cycling: The Unified Sample Preparation Technique for Systems Biology Studies. Vera Gross, Greta Carlson, Gary Smejkal, Ada Kwan, Alexander Ivanov, Emily Freeman, Alexander Lazarev

• ABRF’2008, Association of Biomolecular Resource Facilities Annual Conference, Salt Lake City, UT, February 9-12, 2008 ABRF-sPRG2009 Study: Development of Quantitative Standards for Plasma Proteomics P.C. Andrews, D. Arnott, J.G. Farmar, A.R. Ivanov, J.A. Kowalak, W.S. Lane, K. Mechtler, R. Ogorzalek Loo, and M. Raida

• 56^th American Society for Mass Spectrometry Conference, ASMS’2008, Denver, CO, 6/1-5/2008 Dynamics of protein phosphorylation induced by oxidative stress in mammalian cells using a new on-line enrichment strategy for phosphopeptide analysis. Y. Margolin, E. Freeman, K. Mechtler, W.S. Lane, B.A. Budnik, A.R. Ivanov

• 56^th American Society for Mass Spectrometry Conference, ASMS’2008, Denver, CO, 6/1/2008 -6/5/2008 Comprehensive Analysis of Murine Adipose Tissue by Detergent-Free Pressure Cycling Protein Extraction and High Resolution Tandem Mass Spectrometry Emily Freeman; Vera Gross; Gary Smejkal; Alexander Lazarev; Haiming Cao; Gökhan S. Hotamisligil; Alexander R. Ivanov
• 56^th American Society for Mass Spectrometry Conference, ASMS’2008, Denver, CO, 6/1-5/2008 Exploring benefits of high mass accuracy tandem spectra in proteomics. Thomas Patterson, Alexander R. Ivanov
• 56^th American Society for Mass Spectrometry Conference, ASMS’2008, Denver, CO, 6/1-5/2008 Inferring Protein Quantities from Peptides: Considerations in Selecting Peptide Sequences for Synthesis as Stable Isotope Labeled Standards Philip Andrews ; David Arnott; James Farmar; Alexander R. Ivanov ; Jeffrey A. Kowalak; William S. Lane; Karl Mechtler; Rachel O. Loo; Manfred R. Raida
• ABRF’2009, Association of Biomolecular Resource Facilities Annual Conference, Memphis, TN. 2/7-10/2009. Searching for efficient and high-throughput alternatives for essential sample preparation techniques in mass spectrometry-based functional proteomics. Emily Freeman; Vera Yelena Margolin, Alexander R. Ivanov -

  2009 Outstanding ABRF Poster Award

• ABRF’2009, Association of Biomolecular Resource Facilities Annual Conference, Memphis, TN. 2/7-10/2009.  ABRF-sPRG09:  Development of a Quantitative Proteomics Standard  D. Arnott, J.G. Farmar, A.R. Ivanov, J.A. Kowalak, W.S. Lane, K. Mechtler, B.S. Phinney, M.R. Raida, and S.T. Weintraub

• 11th MASSEP/GBMSDG Joint Symposium on Advances in Separation Science and Mass Spectrometry May 13, 2009, Boston MA Optimization of Rapid Protein Digestion Using Pressure Cycling Technology.   Gross V, Carlson G, Lazarev A, Freeman E, Ivanov AR

• Lazarev, A., Smejkal, G., Romanovsky, I., Cao, H., Hotamisligil, G.S., Ivanov, A.R. (2007) Proteomic Analysis of Adipose Tissue Using Detergent-Free Protein Extraction by Pressure Cycling and High Resolution Tandem Mass Spectrometry. 55th ASMS Conference on Mass Spectrometry, Indianapolis.
   
• Lazarev, A., Smejkal, G., Romanovsky, I., Kwan, A., Cao, H., Hotamisligil, G.S., Ivanov, A.R. (2007) Differential Proteomic Analysis of Murine Adipose Tissue Using Pressure Cycling Technology and High Resolution Tandem Mass Spectrometry. US HUPO 3rd Annual Conference, Seattle. [pdf]
   
• Schmidt, M.S., Houseman, E.A., Doud, M.K., Wolf, D.A., Ivanov, A.R. (2006) Label-free quantitative proteomic analysis of complex samples. HUPO 5th Annual World Congress, Long Beach. [file]
   
• Schmidt, M.S., Houseman, E.A., Kono, K., Doud, M.K., Wolf, D.A., Ivanov, A.R. (2006) Mass Spectrometry-Based Strategies for Semiquantitative, Statistical and Clustering Characterization of Complex Proteomes. 54th ASMS Conference on Mass Spectrometry, Seattle. [pdf]
   
• Schmidt, M.S., Houseman, E.A., Doud, M.K., Wolf, D.A., Ivanov, A.R. (2006) Semiquantitative, Statistical and Clustering Characterization of Complex Proteomes in Mass Spectrometry-Based Studies. US HUPO 2nd Annual Conference, Boston. [pdf]

• Schmidt, M.S., Doud, M.K., Wolf, D.A.,Ivanov, A.R. (2005) Dechiphering Complex Proteomes Using Liquid and Gel Phase Prefractionation Approaches. HUPO 4th Annual World Congress, Munich.

• Schmidt, M.W., Wolf, D.A., Ivanov, A.R. (2004) Differential Proteomic Analysis of Schizosaccharomyces pombe using Metabolic Labeling Followed by Off-Line IEF Prefractionation Nano-LC ESI MS and On-Line 2D-LC ESI MS. 52nd ASMS Conference on Mass Spectrometry, Nashville. [pdf]

• Doud, M.K., Schmidt, M.W., Geyer, R., Wolf, D.A., Taranenko, N., Zeidler, R., Hines, D., Ivanov, A.R. (2004) SCX and IMAC Prefractionation on Spin Columns Prior to 2D PAGE Followed by Nano-LC ESI MS and AP MALDI MS In Proteomic Analysis. 52nd ASMS Conference on Mass Spectrometry, Nashville. [pdf]

• Schmidt, M.W., Wolf, D.A., Ivanov, A.R. (2004) Polymeric Monolithic Capillary Columns in On-Line 2D-LC ESI-MS/MS Proteomic Analysis. HUPO 3rd Annual World Congress, Beijing. [file]

Copyright 2008 President and Fellows of Harvard College. All rights reserved. Created and maintained by HMPR