1. Lopes-Ramos CM, Marieke L Kuijjer, Shuji Ogino, Charles S Fuchs, Dawn L DeMeo, Kimberly Glass, John Quackenbush. Gene regulatory network analysis identifies sex-linked differences in colon cancer drug metabolism. Cancer Res. 2018 in press.
  2. Pinto S, Sato VN, De-Souza EA, Ferraz RC, Camara H, Pinca APF, Mazzotti DR, Lovci MT, Tonon G, Lopes-Ramos CM, Parmigiani RB, Wurtele M, Massirer KB, Mori MA.Enoxacin extends lifespan of C. elegans by inhibiting miR-34-5p and promoting mitohormesis. Redox Biol. 2018 Jun 19;18:84-92.
  3. Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Regulatory network changes between cell lines and their tissues of origin. BMC Genomics. 2017 Sep 12;18(1):723.
  4. Koyama FC, Lopes-Ramos CM, Fernandes JM, Ledesma F, Alves VAF, Perez RO, Camargo AA. Effect of Akt-activation and experimental pharmacological inhibition on responses to neoadjuvant chemoradiotherapy in rectal cancer. Br J Surg. 2018 Jan;105(2):e192-e203.
  5. Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML. Understanding Tissue-Specific Gene Regulation. Cell Rep. 2017 Oct 24;21(4):1077-1088.
  6. Paulson JN, Chen CY, Lopes-Ramos CM, Kuijjer ML, Platig J, Sonawane AR, Fagny M, Glass K, Quackenbush J. Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinformatics. 2017 Oct 3;18(1):437.
  7. Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Exploring regulation in tissues with eQTL networks. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850.
  8. Lopes-Ramos CM, Barros BP, Koyama FC, Carpinetti PA, Pezuk J, Doimo NTS, Habr-Gama A, Perez RO, Parmigiani RB. E2F1 somatic mutation within miRNA target site impairs gene regulation in colorectal cancer. PLoS One. 2017 Jul 13;12(7):e0181153.
  9. Lopes-Ramos CM, Pereira TC, Dogini DB, Gilioli R, Lopes-Cendes I. Lithium carbonate and coenzyme Q10 reduce cell death in a cell model of Machado-Joseph disease. Braz J Med Biol Res. 2016 Nov 21;49(12):e5805.
  10. Marçola M, Lopes-Ramos CM, Pereira EP, Cecon E, Fernandes PA, Tamura EK, Camargo AA, Parmigiani RB, Markus RP. Light/Dark Environmental Cycle Imposes a Daily Profile in the Expression of microRNAs in Rat CD133+ Cells. J Cell Physiol. 2016 Sep;231(9):1953-63.
  11. Lopes-Ramos CM, Koyama FC, Habr-Gama A, Salim ACM, Bettoni F, Asprino P, França GS, Gama-Rodrigues J, Parmigiani RB, Perez RO, Galante PAF, Camargo AA. Comprehensive evaluation of the effectiveness of gene expression signatures topredict complete response to nCRT and guide surgical intervention in rectal cancer. Cancer Genet. 2015 Jun;208(6):319-26.
  12. Lopes-Ramos CM, Habr-Gama A, Quevedo BS, Felício NM, Bettoni F, Koyama FC, Asprino P, Galante PAF, Gama-Rodrigues J, Camargo AA, Perez RO, Parmigiani RB. Overexpression of miR-21-5p as a predictive marker for complete tumor regression to neoadjuvant chemoradiotherapy in rectal cancer patients. BMC Med Genomics. 2014 Dec 11;7:68.
  13. Hinske LC, França GS, Torres HAM, Lopes-Ramos CM, Heyn J, Ohno-Machado J, Kreth S, Galante PAF. miRIAD – integrating microRNA inter – and intragenic data. Database (Oxford). 2014 Oct 6; pii: bau099.
  14. França MC, Yasuda CL, Pereira FR, D’Abreu A, Lopes-Ramos CM, Rosa MV, Cendes F, Lopes-Cendes I. White and grey matter abnormalities in patients with SPG11 mutations. J Neurol Neurosurg Psychiatry. 2012 Aug;83(8):828-33.

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