Selected Pulications

Selected Pulications

Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. “Relating the metatranscriptome and metagenome of the human gut.” Proc Natl Acad Sci , 2014 Jun 3;111(22):E2329-38

Yasuda K, Oh K, Ren B, Tickle TL, Franzosa EA, Wachtman LM, Miller AD, Westmoreland SV, Mansfield KG, Vallender EJ, Miller GM, Rowlett JK, Gevers D, Huttenhower C, Morgan XC. “Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.” Cell Host Microbe, 2015 Mar 11;17(3):385-91

Langille MG*, Zaneveld J*, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. “Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.” Nature Biotechnology, 2013 Sep;31(9):814-21

Segata N, Boernigen D, Morgan XC, Huttenhower C. “PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.” Nature Communications, 2013 Aug 14;4:2304

Morgan XC*, Tickle TL*, Sokol H*, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C. “Dysfunction of the Intestinal Microbiome in Inflammatory Bowel Disease and Treatment.” Genome Biology, 2012, 13:R80

Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, Huttenhower C. “Metagenomic microbial community profiling using unique clade-specific marker genes.” Nature Methods, 2012 Jun 10. doi: 10.1038/nmeth.2066

Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. “Metagenomic biomarker discovery and explanation.” Genome Biology 2011, Jun 24;12(6):R60

Faust K*, Sathirapongsasuti F*, Raes J, Huttenhower C. “Microbial Co-occurrence Relationships in the Human Microbiome.” PLoS Computational Biology, Jul;8(7):e1002606

Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, The Human Microbiome Project Consortium, White O. “A framework for human microbiome research.” Nature, 2012 486(7402):215-21

Huttenhower C*, Gevers D*, Knight R, The Human Microbiome Project Consortium, White O. “Structure, function and diversity of the healthy human microbiome.” Nature, 2012 486(7402):207-14