The following software packages can be downloaded freely. If you find them useful, please email me:lliang@hsph.harvard.edu. Comments and suggestions are welcome! If you are using Mac OS, please read this. | |
GENOME | A rapid coalescent-based whole genome simulator |
mRNA by SNP Browser | The database contains association results of 50k transcripts with 400K SNPs. |
The R package to calculate the optimal number of repeated measures for quantitative trait linkage analysis. | |
GSM | Genotype-based matching to correct for population stratification in large-scale case-control Genetic Association Studies. |
The MQLS program for case-control association testing with related individals using genotype or allele dosage data | |
Web-based browser for gene expression analysis using imputed HapMap genotypes | |
eQTL weighted GWAS | R function to perform genome-wide association analysis guided by eQTL information |
Cross tissue methylation | R package to learn methylation relationship between tissues |
MetProc | R package for metabolomic data processing |
IDCheck | R package for detection of sample contamination in RNA-seq data |
Liming Liang's Faculty Website