Camila Miranda Lopes-Ramos

The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.

Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J.

Genome Biol. 2023 03 09. 24(1):45. PMID: 36894939

X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study.

Hayden LP, Hobbs BD, Busch R, Cho MH, Liu M, Lopes-Ramos CM, Lomas DA, Bakke P, Gulsvik A, Silverman EK, Crapo JD, Beaty TH, Laird NM, Lange C, DeMeo DL.

Respir Res. 2023 Feb 01. 24(1):38. PMID: 36726148

An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.

Ben Guebila M, Weighill D, Lopes-Ramos CM, Burkholz R, Pop RT, Palepu K, Shapoval M, Fagny M, Schlauch D, Glass K, Altenbuchinger M, Kuijjer ML, Platig J, Quackenbush J.

Nat Methods. 2022 05. 19(5):511-513. PMID: 35459940

GRAND: a database of gene regulatory network models across human conditions.

Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J.

Nucleic Acids Res. 2022 01 07. 50(D1):D610-D621. PMID: 34508353

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme.

Lopes-Ramos CM, Belova T, Brunner TH, Ben Guebila M, Osorio D, Quackenbush J, Kuijjer ML.

Cancer Res. 2021 11 01. 81(21):5401-5412. PMID: 34493595

Gene regulatory network inference as relaxed graph matching

Weighill D, Ben Guebila M, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J, Burkholz R.

Proceedings of the AAAI Conference on Artificial Intelligence. 2021. 11(35):10263-10272.

Gene regulatory network inference as relaxed graph matching.

Weighill D, Guebila MB, Lopes-Ramos C, Glass K, Quackenbush J, Platig J, Burkholz R.

Proc Conf AAAI Artif Intell. 2021 Feb. 35(11):10263-10272. PMID: 34707916

Enoxacin induces oxidative metabolism and mitigates obesity by regulating adipose tissue miRNA expression.

Rocha AL, de Lima TI, de Souza GP, Corrêa RO, Ferrucci DL, Rodrigues B, Lopes-Ramos C, Nilsson D, Knittel TL, Castro PR, Fernandes MF, Dos Santos Martins F, Parmigiani RB, Silveira LR, Carvalho HF, Auwerx J, Vinolo MAR, Boucher J, Mori MA.

Sci Adv. 2020 12. 6(49). PMID: 33268375

Genome-Wide Sex and Gender Differences in Cancer.

Lopes-Ramos CM, Quackenbush J, DeMeo DL.

Front Oncol. 2020. 10:597788. PMID: 33330090

Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues.

Lopes-Ramos CM, Chen CY, Kuijjer ML, Paulson JN, Sonawane AR, Fagny M, Platig J, Glass K, Quackenbush J, DeMeo DL.

Cell Rep. 2020 06 23. 31(12):107795. PMID: 32579922