Clifford Meyer

BCOR and BCORL1 Mutations Drive Epigenetic Reprogramming and Oncogenic Signaling by Unlinking PRC1.1 from Target Genes.

Schaefer EJ, Wang HC, Karp HQ, Meyer CA, Cejas P, Gearhart MD, Adelman ER, Fares I, Apffel A, Lim K, Xie Y, Gibson CJ, Schenone M, Murdock HM, Wang ES, Gondek LP, Carroll MP, Vedula RS, Winer ES, Garcia JS, Stone RM, Luskin MR, Carr SA, Long HW, Bardwell VJ, Figueroa ME, Lindsley RC.

Blood Cancer Discov. 2022 Mar 01. 3(2):116-135. PMID: 35015684

Fast alignment and preprocessing of chromatin profiles with Chromap.

Zhang H, Song L, Wang X, Cheng H, Wang C, Meyer CA, Liu T, Tang M, Aluru S, Yue F, Liu XS, Li H.

Nat Commun. 2021 11 12. 12(1):6566. PMID: 34772935

In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target.

Wang X, Tokheim C, Gu SS, Wang B, Tang Q, Li Y, Traugh N, Zeng Z, Zhang Y, Li Z, Zhang B, Fu J, Xiao T, Li W, Meyer CA, Chu J, Jiang P, Cejas P, Lim K, Long H, Brown M, Liu XS.

Cell. 2021 10 14. 184(21):5357-5374.e22. PMID: 34582788

CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity.

Watt AC, Cejas P, DeCristo MJ, Metzger-Filho O, Lam EYN, Qiu X, BrinJones H, Kesten N, Coulson R, Font-Tello A, Lim K, Vadhi R, Daniels VW, Montero J, Taing L, Meyer CA, Gilan O, Bell CC, Korthauer KD, Giambartolomei C, Pasaniuc B, Seo JH, Freedman ML, Ma C, Ellis MJ, Krop I, Winer E, Letai A, Brown M, Dawson MA, Long HW, Zhao JJ, Goel S.

Nat Cancer. 2021 01. 2(1):34-48. PMID: 33997789

Computational Approaches to Modeling Transcription Factor Activity and Gene Regulation.

Meyer CA, Liu XS.

Trends Biochem Sci. 2020 12. 45(12):1094-1095. PMID: 33051080

Integrative analyses of single-cell transcriptome and regulome using MAESTRO.

Wang C, Sun D, Huang X, Wan C, Li Z, Han Y, Qin Q, Fan J, Qiu X, Xie Y, Meyer CA, Brown M, Tang M, Long H, Liu T, Liu XS.

Genome Biol. 2020 08 07. 21(1):198. PMID: 32767996

Correction: Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.

Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Ito Y, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.

J Exp Med. 2020 07 06. 217(7). PMID: 32441763

Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.

Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Ito Y, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.

J Exp Med. 2020 07 06. 217(7). PMID: 32374402

Determinants of transcription factor regulatory range.

Chen CH, Zheng R, Tokheim C, Dong X, Fan J, Wan C, Tang Q, Brown M, Liu JS, Meyer CA, Liu XS.

Nat Commun. 2020 05 18. 11(1):2472. PMID: 32424124

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.

Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS.

Genome Biol. 2020 02 07. 21(1):32. PMID: 32033573