Clifford Meyer

CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity.

Watt AC, Cejas P, DeCristo MJ, Metzger-Filho O, Lam EYN, Qiu X, BrinJones H, Kesten N, Coulson R, Font-Tello A, Lim K, Vadhi R, Daniels VW, Montero J, Taing L, Meyer CA, Gilan O, Bell CC, Korthauer KD, Giambartolomei C, Pasaniuc B, Seo JH, Freedman ML, Ma C, Ellis MJ, Krop I, Winer E, Letai A, Brown M, Dawson MA, Long HW, Zhao JJ, Goel S.

Nat Cancer. 2021 Jan. 2(1):34-48. PMID: 33997789

Computational Approaches to Modeling Transcription Factor Activity and Gene Regulation.

Meyer CA, Liu XS.

Trends Biochem Sci. 2020 12. 45(12):1094-1095. PMID: 33051080

Integrative analyses of single-cell transcriptome and regulome using MAESTRO.

Wang C, Sun D, Huang X, Wan C, Li Z, Han Y, Qin Q, Fan J, Qiu X, Xie Y, Meyer CA, Brown M, Tang M, Long H, Liu T, Liu XS.

Genome Biol. 2020 08 07. 21(1):198. PMID: 32767996

Correction: Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.

Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Ito Y, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.

J Exp Med. 2020 07 06. 217(7). PMID: 32441763

Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.

Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Ito Y, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.

J Exp Med. 2020 07 06. 217(7). PMID: 32374402

Determinants of transcription factor regulatory range.

Chen CH, Zheng R, Tokheim C, Dong X, Fan J, Wan C, Tang Q, Brown M, Liu JS, Meyer CA, Liu XS.

Nat Commun. 2020 05 18. 11(1):2472. PMID: 32424124

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.

Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS.

Genome Biol. 2020 02 07. 21(1):32. PMID: 32033573

Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.

Li S, Wan C, Zheng R, Fan J, Dong X, Meyer CA, Liu XS.

Nucleic Acids Res. 2019 07 02. 47(W1):W206-W211. PMID: 31053864

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS.

Nucleic Acids Res. 2019 01 08. 47(D1):D729-D735. PMID: 30462313

Improved design and analysis of CRISPR knockout screens.

Chen CH, Xiao T, Xu H, Jiang P, Meyer CA, Li W, Brown M, Liu XS.

Bioinformatics. 2018 12 01. 34(23):4095-4101. PMID: 29868757