Computational Approaches to Modeling Transcription Factor Activity and Gene Regulation.
Meyer CA, Liu XS.
Trends Biochem Sci. 2020 Dec. 45(12):1094-1095. PMID: 33051080
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Integrative analyses of single-cell transcriptome and regulome using MAESTRO.
Wang C, Sun D, Huang X, Wan C, Li Z, Han Y, Qin Q, Fan J, Qiu X, Xie Y, Meyer CA, Brown M, Tang M, Long H, Liu T, Liu XS.
Genome Biol. 2020 08 07. 21(1):198. PMID: 32767996
Correction: Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.
Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Ito Y, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.
J Exp Med. 2020 Jul 06. 217(7). PMID: 32441763
Hdac3 is an epigenetic inhibitor of the cytotoxicity program in CD8 T cells.
Tay RE, Olawoyin O, Cejas P, Xie Y, Meyer CA, Weng QY, Fisher DE, Long HW, Brown M, Kim HJ, Wucherpfennig KW.
J Exp Med. 2020 Jul 06. 217(7). PMID: 32374402
Determinants of transcription factor regulatory range.
Chen CH, Zheng R, Tokheim C, Dong X, Fan J, Wan C, Tang Q, Brown M, Liu JS, Meyer CA, Liu XS.
Nat Commun. 2020 05 18. 11(1):2472. PMID: 32424124
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.
Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS.
Genome Biol. 2020 02 07. 21(1):32. PMID: 32033573
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.
Li S, Wan C, Zheng R, Fan J, Dong X, Meyer CA, Liu XS.
Nucleic Acids Res. 2019 07 02. 47(W1):W206-W211. PMID: 31053864
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.
Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS.
Nucleic Acids Res. 2019 01 08. 47(D1):D729-D735. PMID: 30462313
Improved design and analysis of CRISPR knockout screens.
Chen CH, Xiao T, Xu H, Jiang P, Meyer CA, Li W, Brown M, Liu XS.
Bioinformatics. 2018 12 01. 34(23):4095-4101. PMID: 29868757
ATR inhibition controls aggressive prostate tumors deficient in Y-linked histone demethylase KDM5D.
Komura K, Yoshikawa Y, Shimamura T, Chakraborty G, Gerke TA, Hinohara K, Chadalavada K, Jeong SH, Armenia J, Du SY, Mazzu YZ, Taniguchi K, Ibuki N, Meyer CA, Nanjangud GJ, Inamoto T, Lee GM, Mucci LA, Azuma H, Sweeney CJ, Kantoff PW.
J Clin Invest. 2018 07 02. 128(7):2979-2995. PMID: 29863497