Reply to Partridge et al.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes.
Che Y, Yang Y, Xu X, Brinda K, Polz MF, Hanage WP, Zhang T.
Proc Natl Acad Sci U S A. 2021 Aug 31. 118(35). PMID: 34453008
Other Positions
Research Associate in Biomedical Informatics
Biomedical Informatics
Harvard Medical School
Links
Bibliography
SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.
Wikle NB, Tran TN, Gentilesco B, Leighow SM, Albert E, Strong ER, Brinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks E, Boni MF.
medRxiv. 2021 Aug 18. PMID: 34426816
Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts.
Tran TN, Wikle NB, Albert E, Inam H, Strong E, Brinda K, Leighow SM, Yang F, Hossain S, Pritchard JR, Chan P, Hanage WP, Hanks EM, Boni MF.
BMC Med. 2021 07 13. 19(1):162. PMID: 34253200
Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids.
Che Y, Yang Y, Xu X, Brinda K, Polz MF, Hanage WP, Zhang T.
Proc Natl Acad Sci U S A. 2021 May 25. 118(21). PMID: 33975908
Simplitigs as an efficient and scalable representation of de Bruijn graphs.
Brinda K, Baym M, Kucherov G.
Genome Biol. 2021 04 06. 22(1):96. PMID: 33823902
Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes.
Che Y, Yang Y, Xu X, Brinda K, Polz MF, Hanage WP, Zhang T.
Proc Natl Acad Sci U S A. 2021 02 09. 118(6). PMID: 33526659
Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts.
Tran TN, Wikle N, Albert J, Inam H, Strong E, Brinda K, Leighow SM, Yang F, Hossain S, Pritchard JR, Chan P, Hanage WP, Hanks EM, Boni MF.
medRxiv. 2021 Jan 15. PMID: 33469599
Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli.
MacFadden DR, Coburn B, Brinda K, Corbeil A, Daneman N, Fisman D, Lee RS, Lipsitch M, McGeer A, Melano RG, Mubareka S, Hanage WP.
Antimicrob Agents Chemother. 2020 04 21. 64(5). PMID: 32152083
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.
Brinda K, Callendrello A, Ma KC, MacFadden DR, Charalampous T, Lee RS, Cowley L, Wadsworth CB, Grad YH, Kucherov G, O'Grady J, Baym M, Hanage WP.
Nat Microbiol. 2020 03. 5(3):455-464. PMID: 32042129
RNF: a general framework to evaluate NGS read mappers.
Brinda K, Boeva V, Kucherov G.
Bioinformatics. 2016 Jan 01. 32(1):136-9. PMID: 26353839