Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes.
Che Y, Yang Y, Xu X, Brinda K, Polz MF, Hanage WP, Zhang T.
Proc Natl Acad Sci U S A. 2021 Feb 09. 118(6). PMID: 33526659
Other Positions
Research Associate in Biomedical Informatics
Biomedical Informatics
Harvard Medical School
Links
Bibliography
Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts.
Tran TN, Wikle N, Albert J, Inam H, Strong E, Brinda K, Leighow SM, Yang F, Hossain S, Pritchard JR, Chan P, Hanage WP, Hanks EM, Boni MF.
medRxiv. 2021 Jan 15. PMID: 33469599
Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli.
MacFadden DR, Coburn B, Brinda K, Corbeil A, Daneman N, Fisman D, Lee RS, Lipsitch M, McGeer A, Melano RG, Mubareka S, Hanage WP.
Antimicrob Agents Chemother. 2020 04 21. 64(5). PMID: 32152083
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.
Brinda K, Callendrello A, Ma KC, MacFadden DR, Charalampous T, Lee RS, Cowley L, Wadsworth CB, Grad YH, Kucherov G, O'Grady J, Baym M, Hanage WP.
Nat Microbiol. 2020 03. 5(3):455-464. PMID: 32042129
RNF: a general framework to evaluate NGS read mappers.
Brinda K, Boeva V, Kucherov G.
Bioinformatics. 2016 Jan 01. 32(1):136-9. PMID: 26353839
Spaced seeds improve k-mer-based metagenomic classification.
Brinda K, Sykulski M, Kucherov G.
Bioinformatics. 2015 Nov 15. 31(22):3584-92. PMID: 26209798