Kushal K Dey

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease.

Kim SS, Dey KK, Weissbrod O, Márquez-Luna C, Gazal S, Price AL.

Nat Commun. 2020 12 07. 11(1):6258. PMID: 33288751

Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements.

Amariuta T, Ishigaki K, Sugishita H, Ohta T, Koido M, Dey KK, Matsuda K, Murakami Y, Price AL, Kawakami E, Terao C, Raychaudhuri S.

Nat Genet. 2020 12. 52(12):1346-1354. PMID: 33257898

Evaluating the informativeness of deep learning annotations for human complex diseases.

Dey KK, van de Geijn B, Kim SS, Hormozdiari F, Kelley DR, Price AL.

Nat Commun. 2020 09 17. 11(1):4703. PMID: 32943643

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.

Hsiao CJ, Tung P, Blischak JD, Burnett JE, Barr KA, Dey KK, Stephens M, Gilad Y.

Genome Res. 2020 04. 30(4):611-621. PMID: 32312741

Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia.

Marcus JH, Posth C, Ringbauer H, Lai L, Skeates R, Sidore C, Beckett J, Furtwängler A, Olivieri A, Chiang CWK, Al-Asadi H, Dey K, Joseph TA, Liu CC, Der Sarkissian C, Radzeviciute R, Michel M, Gradoli MG, Marongiu P, Rubino S, Mazzarello V, Rovina D, La Fragola A, Serra RM, Bandiera P, Bianucci R, Pompianu E, Murgia C, Guirguis M, Orquin RP, Tuross N, van Dommelen P, Haak W, Reich D, Schlessinger D, Cucca F, Krause J, Novembre J.

Nat Commun. 2020 02 24. 11(1):939. PMID: 32094358

Regional influences on community structure across the tropical-temperate divide.

White AE, Dey KK, Mohan D, Stephens M, Price TD.

Nat Commun. 2019 06 14. 10(1):2646. PMID: 31201312

Inference and visualization of DNA damage patterns using a grade of membership model.

Al-Asadi H, Dey KK, Novembre J, Stephens M.

Bioinformatics. 2019 04 15. 35(8):1292-1298. PMID: 30192911

A new sequence logo plot to highlight enrichment and depletion.

Dey KK, Xie D, Stephens M.

BMC Bioinformatics. 2018 Dec 10. 19(1):473. PMID: 30526486

Correction: Visualizing the structure of RNA-seq expression data using grade of membership models.

Dey KK, Hsiao CJ, Stephens M.

PLoS Genet. 2017 May. 13(5):e1006759. PMID: 28549067

Visualizing the structure of RNA-seq expression data using grade of membership models.