Li Song

Immune receptor repertoires in pediatric and adult acute myeloid leukemia.

Zhang J, Hu X, Wang J, Sahu AD, Cohen D, Song L, Ouyang Z, Fan J, Wang B, Fu J, Gu S, Sade-Feldman M, Hacohen N, Li W, Ying X, Li B, Liu XS.

Genome Med. 2019 11 26. 11(1):73. PMID: 31771646

A multi-sample approach increases the accuracy of transcript assembly.

Song L, Sabunciyan S, Yang G, Florea L.

Nat Commun. 2019 11 01. 10(1):5000. PMID: 31676772

Genomic differences between nasal Staphylococcus aureus from hog slaughterhouse workers and their communities.

You Y, Song L, Nonyane BAS, Price LB, Silbergeld EK.

PLoS One. 2018. 13(3):e0193820. PMID: 29509797

Hybrid assembly with long and short reads improves discovery of gene family expansions.

Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT.

BMC Genomics. 2017 07 19. 18(1):541. PMID: 28724409

Rascaf: Improving Genome Assembly with RNA Sequencing Data.

Song L, Shankar DS, Florea L.

Plant Genome. 2016 11. 9(3). PMID: 27902792

Centrifuge: rapid and sensitive classification of metagenomic sequences.

Kim D, Song L, Breitwieser FP, Salzberg SL.

Genome Res. 2016 12. 26(12):1721-1729. PMID: 27852649

CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.

Song L, Sabunciyan S, Florea L.

Nucleic Acids Res. 2016 06 02. 44(10):e98. PMID: 26975657

Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads.

Song L, Florea L.

Gigascience. 2015. 4:48. PMID: 26500767

Lighter: fast and memory-efficient sequencing error correction without counting.

Song L, Florea L, Langmead B.

Genome Biol. 2014. 15(11):509. PMID: 25398208

Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues.

Florea L, Song L, Salzberg SL.

F1000Res. 2013. 2:188. PMID: 24555089