My research is at the interface of genomics, machine learning, and network biology. I often combine tools from these disciplines to address fundamental questions about the functioning of biological systems. I develop open-source, parallel software to leverage high-dimensional biological data to model regulatory genomics, small molecule dynamics, and metabolism in time and space.
I am currently a postdoctoral fellow at the Quackenbush lab at the Biostatistics department.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J.
Nucleic Acids Res. 2022 Jan 07. 50(D1):D610-D621. PMID: 34508353
Rando HM, Wellhausen N, Ghosh S, Lee AJ, Dattoli AA, Hu F, Byrd JB, Rafizadeh DN, Lordan R, Qi Y, Sun Y, Brueffer C, Field JM, Ben Guebila M, Jadavji NM, Skelly AN, Ramsundar B, Wang J, Goel RR, Park Y, Boca SM, Gitter A, Greene CS.
mSystems. 2021 Dec 21. 6(6):e0023321. PMID: 34726496
Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, D'Agostino McGowan L, Ben Guebila M, Wellhausen N, Knyazev S, Boca SM, Capone S, Qi Y, Park Y, Mai D, Sun Y, Boerckel JD, Brueffer C, Byrd JB, Kamil JP, Wang J, Velazquez R, Szeto GL, Barton JP, Goel RR, Mangul S, Lubiana T, Gitter A, Greene CS.
mSystems. 2021 Oct 26. 6(5):e0009521. PMID: 34698547
Lopes-Ramos CM, Belova T, Brunner TH, Ben Guebila M, Osorio D, Quackenbush J, Kuijjer ML.
Cancer Res. 2021 11 01. 81(21):5401-5412. PMID: 34493595
Weighill D, Ben Guebila M, Glass K, Platig J, Yeh JJ, Quackenbush J.
Front Genet. 2021. 12:649942. PMID: 33968133
Guebila MB.
BMC Bioinformatics. 2020 Sep 29. 21(1):424. PMID: 32993482
Ben Guebila M, Thiele I.
PLoS Comput Biol. 2019 06. 15(6):e1007100. PMID: 31242176
Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT.
Nat Protoc. 2019 03. 14(3):639-702. PMID: 30787451