Mercedeh Javanbakht Movassagh

SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data.

Prashant NM, Alomran N, Chen Y, Liu H, Bousounis P, Movassagh M, Edwards N, Horvath A.

BMC Genomics. 2021 Sep 22. 22(1):689. PMID: 34551708

Vaginal microbiome topic modeling of laboring Ugandan women with and without fever.

Movassagh M, Bebell LM, Burgoine K, Hehnly C, Zhang L, Moran K, Sheldon K, Sinnar SA, Mbabazi-Kabachelor E, Kumbakumba E, Bazira J, Ochora M, Mulondo R, Nsubuga BK, Weeks AD, Gladstone M, Olupot-Olupot P, Ngonzi J, Roberts DJ, Meier FA, Irizarry RA, Broach JR, Schiff SJ, Paulson JN.

NPJ Biofilms Microbiomes. 2021 09 10. 7(1):75. PMID: 34508087

Immune activation during Paenibacillus brain infection in African infants with frequent cytomegalovirus co-infection.

Isaacs AM, Morton SU, Movassagh M, Zhang Q, Hehnly C, Zhang L, Morales DM, Sinnar SA, Ericson JE, Mbabazi-Kabachelor E, Ssenyonga P, Onen J, Mulondo R, Hornig M, Warf BC, Broach JR, Townsend RR, Limbrick DD, Paulson JN, Schiff SJ.

iScience. 2021 Apr 23. 24(4):102351. PMID: 33912816

Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia.

Movassagh M, Oduor C, Forconi C, Moormann AM, Bailey JA.

Sci Rep. 2019 12 30. 9(1):20321. PMID: 31889055

Systematic pan-cancer analysis of somatic allele frequency.

Spurr L, Li M, Alomran N, Zhang Q, Restrepo P, Movassagh M, Trenkov C, Tunnessen N, Apanasovich T, Crandall KA, Edwards N, Horvath A.

Sci Rep. 2018 05 16. 8(1):7735. PMID: 29769535

Overexpressed somatic alleles are enriched in functional elements in Breast Cancer.

Restrepo P, Movassagh M, Alomran N, Miller C, Li M, Trenkov C, Manchev Y, Bahl S, Warnken S, Spurr L, Apanasovich T, Crandall K, Edwards N, Horvath A.

Sci Rep. 2017 08 15. 7(1):8287. PMID: 28811643

Co-Occurrence of COMT and BRCA1/2 Variants in a Population.

Movassagh M, Mudvari P, Horvath A.

N Engl J Med. 2017 05 25. 376(21):2090-2091. PMID: 28538113

Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma.

Oduor CI, Movassagh M, Kaymaz Y, Chelimo K, Otieno J, Ong'echa JM, Moormann AM, Bailey JA.

Front Microbiol. 2017. 8:501. PMID: 28400759

RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data.

Movassagh M, Alomran N, Mudvari P, Dede M, Dede C, Kowsari K, Restrepo P, Cauley E, Bahl S, Li M, Waterhouse W, Tsaneva-Atanasova K, Edwards N, Horvath A.

Nucleic Acids Res. 2016 12 15. 44(22):e161. PMID: 27576531

SNPlice: variants that modulate Intron retention from RNA-sequencing data.

Mudvari P, Movassagh M, Kowsari K, Seyfi A, Kokkinaki M, Edwards NJ, Golestaneh N, Horvath A.

Bioinformatics. 2015 Apr 15. 31(8):1191-8. PMID: 25481010