Group testing via hypergraph factorization applied to COVID-19.
Hong D, Dey R, Lin X, Cleary B, Dobriban E.
Nat Commun. 2022 Apr 05. 13(1):1837. PMID: 35383149
Other Positions
Research Fellow in Radiology
Radiology-Massachusetts General Hospital
Harvard Medical School
Links
Bibliography
COVID-19 Spread Mapper: A multi-resolution, unified framework and open-source tool.
Shi A, Gaynor SM, Dey R, Zhang H, Quick C, Lin X.
Bioinformatics. 2022 Mar 04. PMID: 35244140
Efficient mixed model approach for large-scale genome-wide association studies of ordinal categorical phenotypes.
Bi W, Zhou W, Dey R, Mukherjee B, Sampson JN, Lee S.
Am J Hum Genet. 2021 05 06. 108(5):825-839. PMID: 33836139
Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale.
Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Aslibekyan S, Ballantyne CM, Bielak LF, Blangero J, Boerwinkle E, Bowden DW, Broome JG, Conomos MP, Correa A, Cupples LA, Curran JE, Freedman BI, Guo X, Hindy G, Irvin MR, Kardia SLR, Kathiresan S, Khan AT, Kooperberg CL, Laurie CC, Liu XS, Mahaney MC, Manichaikul AW, Martin LW, Mathias RA, McGarvey ST, Mitchell BD, Montasser ME, Moore JE, Morrison AC, O'Connell JR, Palmer ND, Pampana A, Peralta JM, Peyser PA, Psaty BM, Redline S, Rice KM, Rich SS, Smith JA, Tiwari HK, Tsai MY, Vasan RS, Wang FF, Weeks DE, Weng Z, Wilson JG, Yanek LR, Neale BM, Sunyaev SR, Abecasis GR, Rotter JI, Willer CJ, Peloso GM, Natarajan P, Lin X.
Nat Genet. 2020 09. 52(9):969-983. PMID: 32839606
Fast and robust ancestry prediction using principal component analysis.
Zhang D, Dey R, Lee S.
Bioinformatics. 2020 06 01. 36(11):3439-3446. PMID: 32196066
Robust meta-analysis of biobank-based genome-wide association studies with unbalanced binary phenotypes.
Dey R, Nielsen JB, Fritsche LG, Zhou W, Zhu H, Willer CJ, Lee S.
Genet Epidemiol. 2019 07. 43(5):462-476. PMID: 30793809
Asymptotic properties of principal component analysis and shrinkage-bias adjustment under the generalized spiked population model.
Dey R, Lee S.
J Multivar Anal. 2019 Sep. 173:145-164. PMID: 32831421
Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.
Zhou W, Nielsen JB, Fritsche LG, Dey R, Gabrielsen ME, Wolford BN, LeFaive J, VandeHaar P, Gagliano SA, Gifford A, Bastarache LA, Wei WQ, Denny JC, Lin M, Hveem K, Kang HM, Abecasis GR, Willer CJ, Lee S.
Nat Genet. 2018 09. 50(9):1335-1341. PMID: 30104761
Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.
Nielsen JB, Thorolfsdottir RB, Fritsche LG, Zhou W, Skov MW, Graham SE, Herron TJ, McCarthy S, Schmidt EM, Sveinbjornsson G, Surakka I, Mathis MR, Yamazaki M, Crawford RD, Gabrielsen ME, Skogholt AH, Holmen OL, Lin M, Wolford BN, Dey R, Dalen H, Sulem P, Chung JH, Backman JD, Arnar DO, Thorsteinsdottir U, Baras A, O'Dushlaine C, Holst AG, Wen X, Hornsby W, Dewey FE, Boehnke M, Kheterpal S, Mukherjee B, Lee S, Kang HM, Holm H, Kitzman J, Shavit JA, Jalife J, Brummett CM, Teslovich TM, Carey DJ, Gudbjartsson DF, Stefansson K, Abecasis GR, Hveem K, Willer CJ.
Nat Genet. 2018 09. 50(9):1234-1239. PMID: 30061737
A Fast and Accurate Algorithm to Test for Binary Phenotypes and Its Application to PheWAS.
Dey R, Schmidt EM, Abecasis GR, Lee S.
Am J Hum Genet. 2017 Jul 06. 101(1):37-49. PMID: 28602423