Vincent James Carey

Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis.

Ben-Assa N, Coyne MJ, Fomenkov A, Livny J, Robins WP, Muniesa M, Carey V, Carasso S, Gefen T, Jofre J, Roberts RJ, Comstock LE, Geva-Zatorsky N.

Nucleic Acids Res. 2020 11 04. 48(19):11040-11053. PMID: 33045731

Early-pregnancy transcriptome signatures of preeclampsia: from peripheral blood to placenta.

Yadama AP, Maiorino E, Carey VJ, McElrath TF, Litonjua AA, Loscalzo J, Weiss ST, Mirzakhani H.

Sci Rep. 2020 10 12. 10(1):17029. PMID: 33046794

Multiomic Integration of Public Oncology Databases in Bioconductor.

Ramos M, Geistlinger L, Oh S, Schiffer L, Azhar R, Kodali H, de Bruijn I, Gao J, Carey VJ, Morgan M, Waldron L.

JCO Clin Cancer Inform. 2020 Oct. 4:958-971. PMID: 33119407

Effect of early and late prenatal vitamin D and maternal asthma status on offspring asthma or recurrent wheeze.

Lu M, Litonjua AA, O'Connor GT, Zeiger RS, Bacharier L, Schatz M, Carey VJ, Weiss ST, Mirzakhani H.

J Allergy Clin Immunol. 2020 Aug 19. PMID: 32822692

Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.

Gevaert O, Nabian M, Bakr S, Everaert C, Shinde J, Manukyan A, Liefeld T, Tabor T, Xu J, Lupberger J, Haas BJ, Baumert TF, Hernaez M, Reich M, Quintana FJ, Uhlmann EJ, Krichevsky AM, Mesirov JP, Carey V, Pochet N.

JCO Clin Cancer Inform. 2020 May. 4:421-435. PMID: 32383980

Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.

Carey VJ, Ramos M, Stubbs BJ, Gopaulakrishnan S, Oh S, Turaga N, Waldron L, Morgan M.

JCO Clin Cancer Inform. 2020 May. 4:472-479. PMID: 32453635

Determinants and Measurement of Neonatal Vitamin D: Overestimation of 25(OH)D in Cord Blood Using CLIA Assay Technology.

Lu M, Hollis BW, Carey VJ, Laranjo N, Singh RJ, Weiss ST, Litonjua AA.

J Clin Endocrinol Metab. 2020 04 01. 105(4). PMID: 31872219

Six-Year Follow-up of a Trial of Antenatal Vitamin D for Asthma Reduction.

Litonjua AA, Carey VJ, Laranjo N, Stubbs BJ, Mirzakhani H, O'Connor GT, Sandel M, Beigelman A, Bacharier LB, Zeiger RS, Schatz M, Hollis BW, Weiss ST.

N Engl J Med. 2020 02 06. 382(6):525-533. PMID: 32023372

Toward a gold standard for benchmarking gene set enrichment analysis.

Geistlinger L, Csaba G, Santarelli M, Ramos M, Schiffer L, Turaga N, Law C, Davis S, Carey V, Morgan M, Zimmer R, Waldron L.

Brief Bioinform. 2020 Feb 06. PMID: 32026945

Publisher Correction: Orchestrating single-cell analysis with Bioconductor.

Amezquita RA, Lun ATL, Becht E, Carey VJ, Carpp LN, Geistlinger L, Marini F, Rue-Albrecht K, Risso D, Soneson C, Waldron L, Pagès H, Smith ML, Huber W, Morgan M, Gottardo R, Hicks SC.

Nat Methods. 2020 Feb. 17(2):242. PMID: 31827272