MetaSKAT is a R package for multiple marker meta-analysis. It can carry out meta-analysis of SKAT, SKAT-O and burden tests with individual level genotype data or gene level summary statistics.

User Group:
Please join in the SKAT/MetaSKAT Google Group to ask / discuss / comment about SKAT/MetaSKAT.

We uploaded the package to CRAN. You can download the package, manual, and vignettes from here.


  • Lee, S., Teslovich, T.M., Boehnke, M. and Lin, X. (2013)  General framework for meta-analysis of rare variants in sequencing association studies American Journal of Human Genetics, 93, 42–53