Gene regulatory networks reveal sex difference in lung adenocarcinoma.
Saha E, Ben Guebila M, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM.
Biol Sex Differ. 2024 Aug 06. 15(1):62. PMID: 39107837
Other Positions
Instructor in Medicine
Medicine-Brigham and Women's Hospital
Harvard Medical School
Links
Bibliography
Sex-biased Regulation of Extracellular Matrix Genes in COPD.
Lopes-Ramos CM, Shutta KH, Ryu MH, Huang Y, Saha E, Ziniti J, Chase R, Hobbs BD, Yun JH, Castaldi P, Hersh CP, Glass K, Silverman EK, Quackenbush J, DeMeo DL.
Am J Respir Cell Mol Biol. 2024 Aug 05. PMID: 39102858
Aging-associated Alterations in the Gene Regulatory Network Landscape Associate with Risk, Prognosis and Response to Therapy in Lung Adenocarcinoma.
Saha E, Guebila MB, Fanfani V, Shutta KH, DeMeo DL, Quackenbush J, Lopes-Ramos CM.
bioRxiv. 2024 Jul 03. PMID: 39005266
Bayesian Optimized sample-specific Networks Obtained By Omics data (BONOBO).
Saha E, Fanfani V, Mandros P, Ben-Guebila M, Fischer J, Hoff-Shutta K, Glass K, DeMeo DL, Lopes-Ramos C, Quackenbush J.
bioRxiv. 2023 Nov 17. PMID: 38014256
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data.
Hsieh PH, Lopes-Ramos CM, Zucknick M, Sandve GK, Glass K, Kuijjer ML.
Bioinformatics. 2023 10 03. 39(10). PMID: 37802917
Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma.
Saha E, Guebila MB, Fanfani V, Fischer J, Shutta KH, Mandros P, DeMeo DL, Quackenbush J, Lopes-Ramos CM.
bioRxiv. 2023 Sep 24. PMID: 37790409
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J.
Genome Biol. 2023 03 09. 24(1):45. PMID: 36894939
X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study.
Hayden LP, Hobbs BD, Busch R, Cho MH, Liu M, Lopes-Ramos CM, Lomas DA, Bakke P, Gulsvik A, Silverman EK, Crapo JD, Beaty TH, Laird NM, Lange C, DeMeo DL.
Respir Res. 2023 Feb 01. 24(1):38. PMID: 36726148
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.
Ben Guebila M, Weighill D, Lopes-Ramos CM, Burkholz R, Pop RT, Palepu K, Shapoval M, Fagny M, Schlauch D, Glass K, Altenbuchinger M, Kuijjer ML, Platig J, Quackenbush J.
Nat Methods. 2022 05. 19(5):511-513. PMID: 35459940
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J.
Nucleic Acids Res. 2022 01 07. 50(D1):D610-D621. PMID: 34508353
News
Study sheds light on sex-based differences in gene regulation
New research from Harvard T.H. Chan School of Public Health and Brigham and Women’s Hospital has uncovered sex-based differences in networks that regulate gene expression in a large number of human tissues. The finding is important because it…