Using methylation data to improve transcription factor binding prediction.
Morgan D, DeMeo DL, Glass K.
Epigenetics. 2024 Dec. 19(1):2309826. PMID: 38300850
Secondary Faculty
Kimberly Glass
Other Positions
Assistant Professor of Medicine
Medicine-Brigham and Women's Hospital
Harvard Medical School
Links
Bibliography
Detecting and dissecting signaling crosstalk via the multilayer network integration of signaling and regulatory interactions.
Martini L, Baek SH, Lo I, Raby BA, Silverman EK, Weiss ST, Glass K, Halu A.
Nucleic Acids Res. 2024 Jan 11. 52(1):e5. PMID: 37953325
Joint clinical and molecular subtyping of COPD with variational autoencoders.
Maiorino E, De Marzio M, Xu Z, Yun JH, Chase RP, Hersh CP, Weiss ST, Silverman EK, Castaldi PJ, Glass K.
medRxiv. 2024 Jan 10. PMID: 38260473
Single-sample network modeling on omics data.
De Marzio M, Glass K, Kuijjer ML.
BMC Biol. 2023 12 29. 21(1):296. PMID: 38155351
Bayesian Optimized sample-specific Networks Obtained By Omics data (BONOBO).
Saha E, Fanfani V, Mandros P, Ben-Guebila M, Fischer J, Hoff-Shutta K, Glass K, DeMeo DL, Lopes-Ramos C, Quackenbush J.
bioRxiv. 2023 Nov 17. PMID: 38014256
The metabolic role of vitamin D in children's neurodevelopment: a network study.
De Marzio M, Lasky-Su J, Chu SH, Prince N, Litonjua AA, Weiss ST, Kelly RS, Glass KR.
bioRxiv. 2023 Jul 15. PMID: 37425858
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J.
Genome Biol. 2023 03 09. 24(1):45. PMID: 36894939
Automated selection of changepoints using empirical P-values and trimming.
Quinn M, Chung A, Glass K.
JAMIA Open. 2022 Dec. 5(4):ooac090. PMID: 36325307
Nutrition state of science and dementia prevention: recommendations of the Nutrition for Dementia Prevention Working Group.
Yassine HN, Samieri C, Livingston G, Glass K, Wagner M, Tangney C, Plassman BL, Ikram MA, Voigt RM, Gu Y, O'Bryant S, Minihane AM, Craft S, Fink HA, Judd S, Andrieu S, Bowman GL, Richard E, Albensi B, Meyers E, Khosravian S, Solis M, Carrillo M, Snyder H, Grodstein F, Scarmeas N, Schneider LS, Yassine HN, Samieri C, Livingston G, Glass K, Wagner M, Tangney C, Plassman BL, Ikram MA, Voigt RM, Gu Y, O'Bryant S, Minihane AM, Craft S, Fink HA, Judd S, Andrieu S, Bowman GL, Richard E, Albensi B, Meyers E, Khosravian S, Solis M, Carrillo M, Snyder H, Grodstein F, Scarmeas N, Schneider LS, Yassine HN, Samieri C, Livingston G, Glass K, Wagner M, Tangney C, Plassman BL, Ikram MA, Voigt RM, Gu Y, O'Bryant S, Minihane AM, Craft S, Fink HA, Judd S, Andrieu S, Bowman GL, Richard E, Albensi B, Meyers E, Khosravian S, Solis M, Carrillo M, Snyder H, Grodstein F, Scarmeas N, Schneider LS.
Lancet Healthy Longev. 2022 07. 3(7):e501-e512. PMID: 35821792
Single Cell Transcriptomic Analysis Reveals Organ Specific Pericyte Markers and Identities.
Baek SH, Maiorino E, Kim H, Glass K, Raby BA, Yuan K.
Front Cardiovasc Med. 2022. 9:876591. PMID: 35722109
News
Big data's big visionary
[ Fall 2014 ] As cholera swept through London in the mid-19th century, a physician named John Snow painstakingly drew a paper map indicating clusters of homes where the deadly waterborne infection had struck. In an iconic feat…
