Instructors

Martin Hemberg

Instructor

Biostatistics

Other Positions

Associate Professor of Neurology

Neurology-Brigham and Women's Hospital

Harvard Medical School

Assistant Professor of Immunology

Immunology

Harvard Medical School

Links

Catalyst Profile

Bibliography

Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment.

Shiau C, Cao J, Gong D, Gregory MT, Caldwell NJ, Yin X, Cho JW, Wang PL, Su J, Wang S, Reeves JW, Kim TK, Kim Y, Guo JA, Lester NA, Bae JW, Zhao R, Schurman N, Barth JL, Ganci ML, Weissleder R, Jacks T, Qadan M, Hong TS, Wo JY, Roberts H, Beechem JM, Castillo CF, Mino-Kenudson M, Ting DT, Hemberg M, Hwang WL.

Nat Genet. 2024 Sep 03. PMID: 39227743

Mining alternative splicing patterns in scRNA-seq data using scASfind.

Song Y, Parada G, Lee JTH, Hemberg M.

Genome Biol. 2024 Jul 29. 25(1):197. PMID: 39075577

ApoE e4-dependent alteration of CXCR3 + CD127 + CD4 + T cells is associated with elevated plasma neurofilament light chain in Alzheimer's disease.

Hu D, Chen M, Li X, Morin P, Daley S, Han Y, Hemberg M, Weiner HL, Xia W.

bioRxiv. 2024 Jul 17. PMID: 38853824

A metabolic switch orchestrated by IL-18 and the cyclic dinucleotide cGAMP programs intestinal tolerance.

Mertens RT, Misra A, Xiao P, Baek S, Rone JM, Mangani D, Sivanathan KN, Arojojoye AS, Awuah SG, Lee I, Shi GP, Petrova B, Brook JR, Anderson AC, Flavell RA, Kanarek N, Hemberg M, Nowarski R.

Immunity. 2024 Sep 10. 57(9):2077-2094.e12. PMID: 38906145

Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes.

Cha J, Kim DH, Kim G, Cho JW, Sung E, Baek S, Hong MH, Kim CG, Sim NS, Hong HJ, Lee JE, Hemberg M, Park S, Yoon SO, Ha SJ, Koh YW, Kim HR, Lee I.

J Immunother Cancer. 2024 Jun 10. 12(6). PMID: 38857913

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods.

Neavin D, Senabouth A, Arora H, Lee JTH, Ripoll-Cladellas A, Franke L, Prabhakar S, Ye CJ, McCarthy DJ, Melé M, Hemberg M, Powell JE.

Genome Biol. 2024 04 15. 25(1):94. PMID: 38622708

MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures.

Sit TP, Feord RC, Dunn AW, Chabros J, Oluigbo D, Smith HH, Burn L, Chang E, Boschi A, Yuan Y, Gibbons GM, Khayat-Khoei M, De Angelis F, Hemberg E, Hemberg M, Lancaster MA, Lakatos A, Eglen SJ, Paulsen O, Mierau SB.

bioRxiv. 2024 Apr 11. PMID: 38370637

Integrative analysis of transcriptomic and epigenomic data reveals distinct patterns for developmental and housekeeping gene regulation.

Abnizova I, Stapel C, Boekhorst RT, Lee JTH, Hemberg M.

BMC Biol. 2024 Apr 10. 22(1):78. PMID: 38600550

Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution.

Cho JW, Cao J, Hemberg M.

Genome Biol. 2024 03 08. 25(1):65. PMID: 38459554

Author Correction: Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas.

Gordon WE, Baek S, Nguyen HP, Kuo YM, Bradley R, Fong SL, Kim N, Galazyuk A, Lee I, Ingala MR, Simmons NB, Schountz T, Cooper LN, Georgakopoulos-Soares I, Hemberg M, Ahituv N.

Nat Commun. 2024 Feb 27. 15(1):1777. PMID: 38413559

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