Instructors

Martin Hemberg

Instructor

Biostatistics

Other Positions

Assistant Professor of Neurology

Neurology-Brigham and Women's Hospital

Harvard Medical School

Assistant Professor of Immunology

Immunology

Harvard Medical School

Links

Catalyst Profile

Bibliography

Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis.

Shiau C, Cao J, Gregory MT, Gong D, Yin X, Cho JW, Wang PL, Su J, Wang S, Reeves JW, Kim TK, Kim Y, Guo JA, Lester NA, Schurman N, Barth JL, Weissleder R, Jacks T, Qadan M, Hong TS, Wo JY, Roberts H, Beechem JM, Fernandez-Del Castillo C, Mino-Kenudson M, Ting DT, Hemberg M, Hwang WL.

bioRxiv. 2023 Jun 29. PMID: 37425692

Quasi-prime peptides: identification of the shortest peptide sequences unique to a species.

Mouratidis I, Chan CSY, Chantzi N, Tsiatsianis GC, Hemberg M, Ahituv N, Georgakopoulos-Soares I.

NAR Genom Bioinform. 2023 Jun. 5(2):lqad039. PMID: 37101657

Integrative single-cell characterization of frugivory adaptations in the bat kidney and pancreas.

Gordon WE, Baek S, Nguyen HP, Kuo YM, Bradley R, Galazyuk A, Lee I, Ingala MR, Simmons NB, Schountz T, Cooper LN, Georgakopoulos-Soares I, Hemberg M, Ahituv N.

bioRxiv. 2023 Feb 13. PMID: 36824791

scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes.

Cha J, Yu J, Cho JW, Hemberg M, Lee I.

Nucleic Acids Res. 2023 01 25. 51(2):e8. PMID: 36350625

SC3s: efficient scaling of single cell consensus clustering to millions of cells.

Quah FX, Hemberg M.

BMC Bioinformatics. 2022 Dec 12. 23(1):536. PMID: 36503522

Cell-Free RNA Transcriptome and Prediction of Adverse Pregnancy Outcomes.

Gray KJ, Hemberg M, Karumanchi SA.

Clin Chem. 2022 11 03. 68(11):1358-1360. PMID: 35929553

Production of human entorhinal stellate cell-like cells by forward programming shows an important role of Foxp1 in reprogramming.

Bergmann T, Liu Y, Skov J, Mogus L, Lee J, Pfisterer U, Handfield LF, Asenjo-Martinez A, Lisa-Vargas I, Seemann SE, Lee JTH, Patikas N, Kornum BR, Denham M, Hyttel P, Witter MP, Gorodkin J, Pers TH, Hemberg M, Khodosevich K, Hall VJ.

Front Cell Dev Biol. 2022. 10:976549. PMID: 36046338

Author Correction: High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation.

Georgakopoulos-Soares I, Chan CSY, Ahituv N, Hemberg M.

Genome Biol. 2022 Jul 27. 23(1):164. PMID: 35897074

High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation.

Georgakopoulos-Soares I, Chan CSY, Ahituv N, Hemberg M.

Genome Biol. 2022 07 18. 23(1):159. PMID: 35851062

High-throughput total RNA sequencing in single cells using VASA-seq.

Salmen F, De Jonghe J, Kaminski TS, Alemany A, Parada GE, Verity-Legg J, Yanagida A, Kohler TN, Battich N, van den Brekel F, Ellermann AL, Arias AM, Nichols J, Hemberg M, Hollfelder F, van Oudenaarden A.

Nat Biotechnol. 2022 Jun 27. PMID: 35760914

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