Rachel Fath Daniels

Challenges in identifying mRNA transcript starts and ends from long-read sequencing data.

Calvo-Roitberg E, Daniels RF, Pai AA.

bioRxiv. 2023 Jul 27. PMID: 37546743

Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering.

Sy M, Deme AB, Warren JL, Early A, Schaffner S, Daniels RF, Dieye B, Ndiaye IM, Diedhiou Y, Mbaye AM, Volkman SK, Hartl DL, Wirth DF, Ndiaye D, Bei AK.

Sci Rep. 2022 01 18. 12(1):938. PMID: 35042879

Genetic surveillance for monitoring the impact of drug use on Plasmodium falciparum populations.

Ndiaye YD, Hartl DL, McGregor D, Badiane A, Fall FB, Daniels RF, Wirth DF, Ndiaye D, Volkman SK.

Int J Parasitol Drugs Drug Resist. 2021 12. 17:12-22. PMID: 34333350

Relevance of Higher-Order Epistasis in Drug Resistance.

Lozovsky ER, Daniels RF, Heffernan GD, Jacobus DP, Hartl DL.

Mol Biol Evol. 2021 01 04. 38(1):142-151. PMID: 32745183

Genetic analysis reveals unique characteristics of Plasmodium falciparum parasite populations in Haiti.

Daniels RF, Chenet S, Rogier E, Lucchi N, Herman C, Pierre B, Lemoine JF, Boncy J, Wirth DF, Chang MA, Udhayakumar V, Volkman SK.

Malar J. 2020 Oct 23. 19(1):379. PMID: 33097045

Surveillance of molecular markers for antimalarial resistance in Zambia: Polymorphism of Pfkelch 13, Pfmdr1 and Pfdhfr/Pfdhps genes.

Sitali L, Mwenda MC, Miller JM, Bridges DJ, Hawela MB, Hamainza B, Mudenda-Chilufya M, Chizema-Kawesha E, Daniels RF, Eisele TP, Nerland AH, Chipeta J, Lindtjorn B.

Acta Trop. 2020 Dec. 212:105704. PMID: 33002448

Use of a Plasmodium vivax genetic barcode for genomic surveillance and parasite tracking in Sri Lanka.

Dewasurendra RL, Baniecki ML, Schaffner S, Siriwardena Y, Moon J, Doshi R, Gunawardena S, Daniels RF, Neafsey D, Volkman S, Chandrasekharan NV, Wirth DF, Karunaweera ND.

Malar J. 2020 Sep 21. 19(1):342. PMID: 32958025

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal.

Daniels RF, Schaffner SF, Dieye Y, Dieng G, Hainsworth M, Fall FB, Diouf CN, Ndiop M, Cisse M, Gueye AB, Sarr O, Guinot P, Deme AB, Bei AK, Sy M, Thwing J, MacInnis B, Earle D, Guinovart C, Sene D, Hartl DL, Ndiaye D, Steketee RW, Wirth DF, Volkman SK.

Malar J. 2020 Aug 03. 19(1):276. PMID: 32746830

Evidence for Reduced Malaria Parasite Population after Application of Population-Level Antimalarial Drug Strategies in Southern Province, Zambia.

Daniels RF, Schaffner SF, Bennett A, Porter TR, Yukich JO, Mulube C, Mambwe B, Mwenda MC, Chishimba S, Bridges DJ, Moonga H, Hamainza B, Chizema Kawesha E, Miller JM, Steketee RW, Wirth DF, Eisele TP, Hartl DL, Volkman SK.

Am J Trop Med Hyg. 2020 08. 103(2_Suppl):66-73. PMID: 32618255

Adherence to Mass Drug Administration with Dihydroartemisinin-Piperaquine and Plasmodium falciparum Clearance in Southern Province, Zambia.

Finn TP, Porter TR, Moonga H, Silumbe K, Daniels RF, Volkman SK, Yukich JO, Keating J, Bennett A, Steketee RW, Miller JM, Eisele TP.

Am J Trop Med Hyg. 2020 08. 103(2_Suppl):37-45. PMID: 32618267