Tara Denise Eicher

Consistent Multi-Omic Relationships Uncover Molecular Basis of Pediatric Asthma IgE Regulation.

Eicher T, Kelly RS, Braisted J, Siddiqui JK, Celedón J, Clish C, Gerszten R, Weiss ST, McGeachie M, Machiraju R, Lasky-Su J, Mathé EA.

medRxiv. 2024 Jun 06. PMID: 38883716

IntLIM 2.0: identifying multi-omic relationships dependent on discrete or continuous phenotypic measurements.

Eicher T, Spencer KD, Siddiqui JK, Machiraju R, Mathé EA.

Bioinform Adv. 2023. 3(1):vbad009. PMID: 36922980

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes.

Braisted J, Patt A, Tindall C, Sheils T, Neyra J, Spencer K, Eicher T, Mathé EA.

Bioinformatics. 2023 01 01. 39(1). PMID: 36373969

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.

Eicher T, Chan J, Luu H, Machiraju R, Mathé EA.

BMC Bioinformatics. 2021 Jan 30. 22(1):35. PMID: 33516170

An OpenData portal to share COVID-19 drug repurposing data in real time.

Brimacombe KR, Zhao T, Eastman RT, Hu X, Wang K, Backus M, Baljinnyam B, Chen CZ, Chen L, Eicher T, Ferrer M, Fu Y, Gorshkov K, Guo H, Hanson QM, Itkin Z, Kales SC, Klumpp-Thomas C, Lee EM, Michael S, Mierzwa T, Patt A, Pradhan M, Renn A, Shinn P, Shrimp JH, Viraktamath A, Wilson KM, Xu M, Zakharov AV, Zhu W, Zheng W, Simeonov A, Mathé EA, Lo DC, Hall MD, Shen M.

bioRxiv. 2020 Jun 05. PMID: 32511420

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources.

Eicher T, Kinnebrew G, Patt A, Spencer K, Ying K, Ma Q, Machiraju R, Mathé AEA.

Metabolites. 2020 May 15. 10(5). PMID: 32429287

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.

Eicher T, Patt A, Kautto E, Machiraju R, Mathé E, Zhang Y.

BMC Bioinformatics. 2019 Dec 20. 20(Suppl 24):669. PMID: 31861998