STAAR Workflow: A cloud-based workflow for scalable and reproducible rare variant analysis.
Gaynor SM, Westerman KE, Ackovic LL, Li X, Li Z, Manning AK, Philippakis A, Lin X.
Bioinformatics. 2022 Apr 20. PMID: 35441669
Other Positions
Coordinating Director, Program in Quantitative Genomics
Biostatistics
Harvard T.H. Chan School of Public Health
Professor of Biostatistics and Statistics
Statistics -Sr. Faculty
Harvard Faculty of Arts and Sciences
Professor of Statistics
Statistics -Sr. Faculty
Harvard Faculty of Arts and Sciences
Links
Bibliography
COVID-19 Spread Mapper: A multi-resolution, unified framework and open-source tool.
Shi A, Gaynor SM, Dey R, Zhang H, Quick C, Lin X.
Bioinformatics. 2022 Mar 04. PMID: 35244140
Leveraging a surrogate outcome to improve inference on a partially missing target outcome.
McCaw ZR, Gaynor SM, Sun R, Lin X.
Biometrics. 2022 Feb 26. PMID: 35218565
A multi-dimensional integrative scoring framework for predicting functional variants in the human genome.
Li X, Yung G, Zhou H, Sun R, Li Z, Hou K, Zhang MJ, Liu Y, Arapoglou T, Wang C, Ionita-Laza I, Lin X.
Am J Hum Genet. 2022 03 03. 109(3):446-456. PMID: 35216679
Risk assessment for acute kidney injury and death among new COVID-19 positive adult patients without chronic kidney disease: retrospective cohort study among three US hospitals.
Li D, Ren H, Varelmann DJ, Sarin P, Xu P, Wu D, Li Q, Lin X.
BMJ Open. 2022 02 21. 12(2):e053635. PMID: 35190428
Upregulated heme biosynthesis increases obstructive sleep apnea severity: a pathway-based Mendelian randomization study.
Wang H, Kurniansyah N, Cade BE, Goodman MO, Chen H, Gottlieb DJ, Gharib SA, Purcell SM, Lin X, Saxena R, Zhu X, Durda P, Tracy R, Liu Y, Taylor KD, Johnson WC, Gabriel S, Smith JD, Aguet F, Ardlie K, Blackwell T, Reiner AP, Rotter JI, Rich SS, Redline S, Sofer T.
Sci Rep. 2022 01 27. 12(1):1472. PMID: 35087136
Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.
Cade BE, Lee J, Sofer T, Wang H, Zhang M, Chen H, Gharib SA, Gottlieb DJ, Guo X, Lane JM, Liang J, Lin X, Mei H, Patel SR, Purcell SM, Saxena R, Shah NA, Evans DS, Hanis CL, Hillman DR, Mukherjee S, Palmer LJ, Stone KL, Tranah GJ, Abecasis GR, Boerwinkle EA, Correa A, Cupples LA, Kaplan RC, Nickerson DA, North KE, Psaty BM, Rotter JI, Rich SS, Tracy RP, Vasan RS, Wilson JG, Zhu X, Redline S.
Genome Med. 2021 08 26. 13(1):136. PMID: 34446064
The Association Between Inflammatory and Oxidative Stress Biomarkers and Plasma Metabolites in a Longitudinal Study of Healthy Male Welders.
Gao S, Quick C, Guasch-Ferre M, Zhuo Z, Hutchinson JM, Su L, Hu F, Lin X, Christiani D.
J Inflamm Res. 2021. 14:2825-2839. PMID: 34234508
Identifying US County-level characteristics associated with high COVID-19 burden.
Li D, Gaynor SM, Quick C, Chen JT, Stephenson BJK, Coull BA, Lin X.
BMC Public Health. 2021 05 28. 21(1):1007. PMID: 34049526
Integrative omics provide biological and clinical insights into acute respiratory distress syndrome.
Du M, Garcia JGN, Christie JD, Xin J, Cai G, Meyer NJ, Zhu Z, Yuan Q, Zhang Z, Su L, Shen S, Dong X, Li H, Hutchinson JN, Tejera P, Lin X, Wang M, Chen F, Christiani DC.
Intensive Care Med. 2021 07. 47(7):761-771. PMID: 34032881
News
Using quantitative genomics to track and understand COVID-19
Tracking variants of SARS-CoV-2, understanding which mutations make the virus more dangerous, and figuring out where the virus originally came from were some of the topics highlighted at the 15th annual Program in Quantitative Genomics conference.
Heavy smokers with non-small cell lung cancer could benefit from certain immunotherapies
Knowing the current and previous smoking habits of patients with metastatic non-small cell lung cancer (NSCLC) could allow clinicians to make better informed treatment decisions, according to new research led by Harvard T.H. Chan School of Public Health.…
Faculty News
Faculty awards and honors, appointments and promotions.
Three Harvard Chan School faculty named ‘changemakers of public health’
Mary Bassett, Bizu Gelaye, and Xihong Lin are among 50 alumni of the University of Washington School of Public Health who have been recognized as “changemakers” in the field of public health.
Biostats professor testifies before UK Parliament on COVID-19 response
Xihong Lin, professor of biostatistics at Harvard T.H. Chan School of Public Health, testified before the UK Parliament’s Science and Technology Committee in April. Lin’s testimony focused on lessons learned so far in the fight against COVID-19. Following…