Computational meta'omics for microbial community studies.
Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C.
Mol Syst Biol. 2013 May 14. 9:666. PMID: 23670539
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Bibliography
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.
Segata N, Börnigen D, Morgan XC, Huttenhower C.
Nat Commun. 2013. 4:2304. PMID: 23942190
Chapter 12: Human microbiome analysis.
Morgan XC, Huttenhower C.
PLoS Comput Biol. 2012. 8(12):e1002808. PMID: 23300406
Biodiversity and functional genomics in the human microbiome.
Morgan XC, Segata N, Huttenhower C.
Trends Genet. 2013 Jan. 29(1):51-8. PMID: 23140990
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.
Genome Biol. 2012 Apr 16. 13(9):R79. PMID: 23013615
Electing a candidate: a speculative history of the bacterial phylum OP10.
Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB.
Environ Microbiol. 2012 Dec. 14(12):3069-80. PMID: 22497633
Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.
Lee KC, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JLJ, Lagutin K, McDonald IR, Stott MB.
Int J Syst Evol Microbiol. 2011 Oct. 61(Pt 10):2482-2490. PMID: 21097641
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining.
Morgan XC, Ni S, Miranker DP, Iyer VR.
BMC Bioinformatics. 2007 Nov 15. 8:445. PMID: 18005433
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment.
Kim J, Bhinge AA, Morgan XC, Iyer VR.
Nat Methods. 2005 Jan. 2(1):47-53. PMID: 15782160