Dominik Heider

Predicting hosts and cross-species transmission of Streptococcus agalactiae by interpretable machine learning.

Ren Y, Li C, Nanayakkara Sapugahawatte D, Zhu C, Spänig S, Jamrozy D, Rothen J, Daubenberger CA, Bentley SD, Ip M, Heider D.

Comput Biol Med. 2024 Mar. 171:108185. PMID: 38401454

POLAR: prediction of prolonged mechanical ventilation in patients with myasthenic crisis.

Heider D, Stetefeld H, Meisel A, Bösel J, Artho M, Linker R, Angstwurm K, Neumann B.

J Neurol. 2024 Feb 08. PMID: 38329540

Editorial: Artificial intelligence and bioinformatics applications for omics and multi-omics studies.

Facchiano A, Heider D, Mutarelli M.

Front Genet. 2024. 15:1371473. PMID: 38352165

NeuralBeds: Neural embeddings for efficient DNA data compression and optimized similarity search.

Sarumi OA, Hahn M, Heider D.

Comput Struct Biotechnol J. 2024 Dec. 23:732-741. PMID: 38298179

Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification.

Pfeifer B, Chereda H, Martin R, Saranti A, Clemens S, Hauschild AC, Beißbarth T, Holzinger A, Heider D.

Bioinformatics. 2023 11 01. 39(11). PMID: 37988152

LAMPPrimerBank, a manually curated database of experimentally validated loop-mediated isothermal amplification primers for detection of respiratory pathogens.

Arabi-Jeshvaghani F, Javadi-Zarnaghi F, Löchel HF, Martin R, Heider D.

Infection. 2023 Dec. 51(6):1809-1818. PMID: 37828369

Interactive polar diagrams for model comparison.

Anžel A, Heider D, Hattab G.

Comput Methods Programs Biomed. 2023 Dec. 242:107843. PMID: 37832432

Sharing Data With Shared Benefits: Artificial Intelligence Perspective.

Tajabadi M, Grabenhenrich L, Ribeiro A, Leyer M, Heider D.

J Med Internet Res. 2023 08 29. 25:e47540. PMID: 37642995

RepairNatrix: a Snakemake workflow for processing DNA sequencing data for DNA storage.

Schwarz PM, Welzel M, Heider D, Freisleben B.

Bioinform Adv. 2023. 3(1):vbad117. PMID: 38496344

Comparative analysis of full-length 16s ribosomal RNA genome sequencing in human fecal samples using primer sets with different degrees of degeneracy.

Waechter C, Fehse L, Welzel M, Heider D, Babalija L, Cheko J, Mueller J, Pöling J, Braun T, Pankuweit S, Weihe E, Kinscherf R, Schieffer B, Luesebrink U, Soufi M, Ruppert V.

Front Genet. 2023. 14:1213829. PMID: 37564874